Publications - Microscopy for Biomedicine

Journal Article

2020

Skoupý, R., Fořt, T., Krzyžánek, V. Nanoscale Estimation of Coating Thickness on Substrates via Standardless BSE Detector Calibration. Nanomaterials. 2020, 10(2), 332. ISSN 2079-4991. ABSTRACT

2019

Dražanová, E., Krátká, L., Vaškovicová, N., Skoupý, R., Horská, K., Babinská, Z., Kotolová, H., Vrlíková, L., Buchtová, M., Starčuk jr., Z., Rudá-Kučerová, J. Olanzapine exposure diminishes perfusion and decreases volume of sensorimotor cortex in rats. Pharmacological Reports. 2019, 71(5), 839-847. ISSN 1734-1140. ABSTRACT

Holáň, V., Javorková, E., Vrbová, K., Večeřa, Z., Mikuška, P., Coufalík, P., Kulich, P., Skoupý, R., Machala, M., Zajícová, A. A murine model of the effects of inhaled CuO nanoparticles on cells of innate and adaptive immunity - a kinetic study of a continuous three-month exposure. Nanotoxicology.  2019, 13(7), 952-963. ISSN 1743-5390. ABSTRACT

Hrubanová, K., Krzyžánek, V.. Inovativní metodika mrazového lámání a cryo-SEM demonstrovaná na biofilmu Candidy parapsilosis. Jemná mechanika a optika.  2019, 64(1), 15-17. ISSN 0447-6441.

Knötigová, P.T., Mašek, J., Hubatka, F., Kotouček, J., Kulich, P., Šimečková, P., Bartheldyová, E., Machala, M., Švadláková, T., Krejsek, J., Vaškovicová, N., Skoupý, R., Krzyžánek, V., Macaulay, V., Katzuba, M., Fekete, L., Ashcheulov, P., Raška, M., Kratochvílová, I., Turánek, J. Application of Advanced Microscopic Methods to Study the Interaction of Carboxylated Fluorescent Nanodiamonds with Membrane Structures in THP-1 Cells: Activation of Inflammasome NLRP3 as the Result of Lysosome Destabilization. MOLECULAR PHARMACEUTICS. 2019, 16(8), 3441-3451. ISSN 1543-8384. ABSTRACT

Lalinský, O., Schauer, P., Kucera, M. Influence of Mg-to-Ce Concentration Ratio on Cathodoluminescence in LuAG and LuGAGG Single-Crystalline Films. Physica Status Solidi. A. 2019, 216(18), 1801016. ISSN 1862-6300. ABSTRACT

Lalinský, O., Schauer, P. Nové granátové scintilátory pro detektory se superrychlou odezvou. Jemná mechanika a optika.  2019, 64(1), 18-20. ISSN 0447-6441.

Sedláček, P., Slaninova, E., Koller, M., Nebesářová, J., Marová, I., Krzyžánek, V., Obruča, S. PHA granules help bacterial cells to preserve cell integrity when exposed to sudden osmotic imbalances. New Biotechnology. 2019, 49, 129-136. ISSN 1871-6784. ABSTRACT

Sedláček, P., Slaninova, E., Enev, V., Koller, M., Nebesářová, J., Marová, I., Hrubanová, K., Krzyžánek, V., Samek, O., Obruča, S. What keeps polyhydroxyalkanoates in bacterial cells amorphous? A derivation from stress exposure experiments. Applied Microbiology and Biotechnology. 2019, 103(4), 1905-1917. ISSN 0175-7598. ABSTRACT

Schauer, P., Lalinský, O., Kučera, M. Prospective scintillation electron detectors for S(T)EM based on garnet film scintillators. Microscopy Research and Technique.  2019, 82(3), 272-282. ISSN 1059-910X. ABSTRACT 

Skoupý, R., Nebesářová, J., Šlouf, M., Krzyžánek, V. Quantitative STEM imaging of electron beam induced mass loss of epoxy resin sections. Ultramicroscopy.  2019, 202(JUL), 44-50. ISSN 0304-3991. ABSTRACT 

2018

Hrubanová, Kamila, Krzyžánek, Vladislav, Nebesářová, Jana, Růžička, F., Pilát, Zdeněk, Samek, Ota. Monitoring Candida parapsilosis and Staphylococcus epidermidis Biofilms by a Combination of Scanning Electron Microscopy and Raman Spectroscopy. Sensors.  2018, 18(12), 4089. ISSN 1424-8220. ABSTRACT

Hrubanová, Kamila, Nebesářová, Jana, Růžička, F., Krzyžánek, Vladislav. The innovation of cryo-SEM freeze-fracturing methodology demonstrated on high pressure frozen biofilm. Micron.  2018, 110, JUL, 28-35. ISSN 0968-4328. ABSTRACT

Kučera, D., Pernicová, I., Kovalčik, A., Koller, M., Müllerová, L., Sedláček, P., Mravec, F., Nebesářová, Jana, Kalina, M., Márová, I., Krzyžánek, Vladislav, Obruča, S. Characterization of the promising poly(3-hydroxybutyrate) producing halophilic bacterium Halomonas halophila. Bioresource Technology.  2018, 256,  552-556. ISSN 0960-8524. ABSTRACT

Marvanová, S., Kulich, P., Skoupý, Radim, Hubatka, F., Cigánek, M., Bendl, J., Hovorka, J., Machala, M. Size-segregated urban aerosol characterization by electron microscopy and dynamic light scattering and influence of sample preparation. Atmospheric Environment.  2018,  178, APR, 181-190. ISSN 1352-2310. ABSTRACT

Šlouf, Miroslav, Pavlova, Ewa, Krejčíková, Sabina, Ostafinska, Aleksandra, Zhigunov, Alexander, Krzyžánek, Vladislav, Sowinski, P., Piorkowska, E. Relations between morphology and micromechanical properties of alpha, beta and gamma phases of iPP. Polymer Testing.  2018, 67,  522-532. ISSN 0142-9418. ABSTRACT

2017

Fialová, D.; Skoupý, Radim; Drozdová, E.; Paták, Aleš; Piňos, Jakub; Šín, L.; Beňuš, R.; Klíma, B. The Application of Scanning Electron Microscopy with Energy-Dispersive X-Ray Spectroscopy (SEM-EDX) in Ancient Dental Calculus for the Reconstruction of Human Habits. Microscopy and Microanalysis, 2017, vol. 23, iss. 6, pp. 1207-1213. ISSN 1431-9276. ABSTRACT

Fialová, D., Drozdová, E., Skoupý, Radim, Mikulík, P., Klíma, B. Scanning electron microscopy of dental calculus from the great moravian necropolis Znojmo-Hradiště. Anthropologie.  2017, roč. 55, č. 3, s. 343-351. ISSN 0323-1119. ABSTRACT

Hrubanová, Kamila; Krzyžánek, Vladislav; Samek, Ota; Skoupý, Radim; Šiler, Martin; Ježek, Jan; Obruča, S.; Zemánek, Pavel. Morphological and Production Changes in Planktonic and Biofilm Cells Monitored Using SEM and Raman Spectroscopy. Microscopy and Microanalysis, 2017, vol. 23, S1, pp. 1158-1159. ISSN 1431-9276. ABSTRACT

Lalinský, Ondřej, Schauer, Petr. Časově korelované čítání jednotlivých fotonů: Nová metoda pro studium doznívání katodoluminiscence. Jemná mechanika a optika.  2017, roč. 62, č. 10, s. 248-250. ISSN 0447-6441.

Navrátil, Z.; Morávek, T.; Ráhel’, J.; Čech, J.; Lalinský, Ondřej; Trunec, D. Diagnostics of pre-breakdown light emission in a helium coplanar barrier discharge: the presence of neutral bremsstrahlung. Plasma Sources Science & Technology, 2017, vol. 26, iss. 5, pp. 1-10, 055025. ISSN 0963-0252. ABSTRACT

Obruča, S.; Sedláček, P.; Mravec, F.; Krzyžánek, Vladislav; Nebesářová, Jana; Samek, Ota; Kučera, D.; Benešová, P.; Hrubanová, Kamila; Milerová, M.; Márová, I. The presence of PHB granules in cytoplasm protects non-halophilic bacterial cells against the harmful impact of hypertonic environments. New Biotechnology, 2017, vol. 39, OCT, pp. 68-80. ISSN 1871-6784. ABSTRACT

Schauer, Petr; Lalinský, Ondřej; Kučera, M.; Lučeničová, Z.; Hanuš, M. Effect of Mg co-doping on cathodoluminescence properties of LuGAGG:Ce single crystalline garnet films. Optical Materials, 2017, vol. 72, OCT, pp. 359-366. ISSN 0925-3467. ABSTRACT 

Valigurová, A.; Vaškovicová, Naděžda; Diakin, A.; Paskerová, G.G.; Simdyanov, T.G.; Kováčiková, M. Motility in blastogregarines (Apicomplexa): Native and drug-induced organisation of Siedleckia nematoides cytoskeletal elements. PLoS ONE, 2017, vol. 12, iss. 6, e0179709. E-ISSN 1932-6203. ABSTRACT 

Vaškovicová, Naděžda, Skoupý, Radim, Krzyžánek, Vladislav. Aplikace nízkých teplot pro zvýšení katodoluminiscenčního signálu v rastrovacím elektronovém mikroskopu. Jemná mechanika a optika.  2017, roč. 62, č. 10, s. 260-263. ISSN 0447-6441. 

Vaškovicová, Naděžda, Skoupý, Radim, Paták, Aleš, Hrubanová, Kamila, Krzyžánek, Vladislav. Cathodoluminescence Study of Microdiamonds and Improvements of Signal Detection by Lowering Temperature of the Sample. Microscopy and Microanalysis.  2017, vol. 23, S1, pp. 2284-2285. ISSN 1431-9276.

2016

Bok, Jan; Lalinský, Ondřej; Hanuš, M.; Onderišinová, Z.; Kelar, J.; Kučera, M. GAGG:ce single crystalline films: New perspective scintillators for electron detection in SEM. Ultramicroscopy. 2016, vol. 163, APR, pp. 1-5. ISSN 0304-3991. ABSTRACT

Bok, Jan; Horáček, Miroslav; Kolařík, Vladimír; Urbánek, Michal; Matějka, Milan; Krzyžánek, Vladislav. Measurements of current density distribution in shaped e-beam writers. Microelectronic Engineering. 2016, vol. 149, JAN 5, pp. 117-124. ISSN 0167-9317. ABSTRACT

Fialová, D.; Skoupý, Radim; Drozdová, E.; Krzyžánek, Vladislav; Šín, L.; Beňuš, R.; Klíma, B. The Application of Scanning Electron Microscopy with Energy Dispersive X-ray Spectroscopy (SEM-EDX) in Ancient Dental Calculus for the Reconstruction of Human Habits. Microscopy and Microanalysis. 2016, vol. 22, S3, pp. 2056-2057. ISSN 1431-9276. ABSTRACT

Hrubanová, Kamila; Samek, Ota; Haroniková, A.; Bernatová, Silvie; Zemánek, Pavel; Márová, I.; Krzyžánek, Vladislav. Morphological and Production Changes in Stressed Red Yeasts Monitored Using SEM and Raman Spectroscopy. Microscopy and Microanalysis. 2016, vol. 22, S3, pp. 1146-1147lo1211. ISSN 1431-9276. ABSTRACT

Kučera, M.; Onderišinová, Z.; Bok, Jan; Hanuš, M.; Schauer, Petr; Nikl, Martin. Scintillation response of Ce3+ doped GdGa-LuAG multicomponent garnet films under e-beam excitation. Journal of Luminescence, 2016, 169 Part B, JAN 2016, pp. 674-677. ISSN 0022-2313. ABSTRACT

Mravec, F.; Obruča, S.; Krzyžánek, Vladislav; Sedláček, P.; Hrubanová, Kamila; Samek, Ota; Kučera, D.; Benešová, P.; Nebesářová, Jana. Accumulation of PHA granules in Cupriavidus necator as seen by confocal fluorescence microscopy. FEMS Microbiology Letters. 2016, vol. 363, iss. 10, fnw094:1-7. ISSN 0378-1097.  ABSTRACT

Obruča, S.; Sedláček, P.; Krzyžánek, Vladislav; Mravec, F.; Hrubanová, Kamila; Samek, Ota; Kučera, D.; Benešová, P.; Márová, I. Accumulation of Poly(3-hydroxybutyrate) Helps Bacterial Cells to Survive Freezing. PLoS ONE, 2016, vol. 11, iss. 6, 0157778:1-16. E-ISSN 1932-6203. ABSTRACT

Resch, A.; Blatt, K.; Malkus, U.; Fercher, CH.; Swoboda, I.; Focke-Tejkl, M.; Chen, K. W.; Seiberler, S.; Mittermann, I.; Lupinek, CH.; Rodriguez-Dominguez, A.; Zieglmayer, P.; Zieglmayer, R.; Keller, W.; Krzyžánek, Vladislav; Valent, P.; Valenta, R.; Vrtala, S. Molecular, Structural and Immunological Characterization of Der p 18, a Chitinase-Like House Dust Mite Allergen. PLoS ONE. 2016, vol. 11, iss. 8, e0160641:1-19. E-ISSN 1932-6203. ABSTRACT

Skoupý, Radim; Nebesářová, Jana; Krzyžánek, Vladislav. Electron Beam Induced Mass Loss Dependence on Stained Thin Epon Resin Sections. Microscopy and Microanalysis. 2016, vol. 22, S3, pp. 926-927. ISSN 1431-9276. ABSTRACT

Tacke, S.; Krzyžánek, Vladislav; Nüsse, H.; Wepf, R.A.; Klingauf, J.; Reichelt, R. A Versatile High-Vacuum Cryo-transfer System for Cryo-microscopy and Analytics. Biophysical Journal. 2016, vol. 110, iss. 4, pp. 758-765. ISSN 0006-3495. ABSTRACT

Vaškovicová, Naděžda; Hrubanová, Kamila; Krzyžánek, Vladislav. Is Sputtering Sufficient for Production of Replicas?. Microscopy and Microanalysis. 2016, vol. 22, S3, pp. 44-45. ISSN 1431-9276. ABSTRACT

Vaškovicová, Naděžda; Hrubanová, Kamila; Krzyžánek, Vladislav. Processing a Biological Tissue from Cryo-SEM to Replica. Microscopy and Microanalysis. 2016, vol. 22, S3, pp. 236-237. ISSN 1431-9276. ABSTRACT

Voběrková, S.; Hermanová, S.; Hrubanová, Kamila; Krzyžánek, Vladislav. Biofilm formation and extracellular polymeric substances (EPS) production by Bacillus subtilis depending on nutritional conditions in the presence of polyester film. Folia Microbiologica. 2016, vol. 61, iss. 2, pp. 91-100. ISSN 0015-5632. ABSTRACT

2015

Banerjee, S.; Resch, Y.; Chen, K. W.; Swoboda, I.; Focke-Tejkl, M.; Blatt, K.; Novak, N.; Wickman, M.; van Hage, M.; Ferrara, R.; Mari, A.; Purohit, A.; Pauli, G.; Sibanda, E. N.; Ndlovu, P.; Thomas, W. R.; Krzyžánek, Vladislav; Tacke, S.; Malkus, U.; Valent, P.; Valenta, R.; Vrtala, S. Der p 11 Is a Major Allergen for House Dust Mite-Allergic Patients Suffering from Atopic Dermatitis. Journal of Investigative Dermatology. 2015, vol. 135, iss. 1, pp. 102-109. ISSN 0022-202X. ABSTRACT

Bok, Jan; Horodyský, P.; Krzyžánek, Vladislav. Effect of oxidation annealing on optical properties of YAG:Ce single crystals. Optical Materials. 2015, vol. 46, AUG 2015, pp. 591-595. ISSN 0925-3467. ABSTRACT

Burdikova, Z.; Svindrych, Z.; Hickey, C.; Wilkinson, M. G.; Auty, M. A. E.; Samek, Ota; Bernatová, Silvie; Krzyžánek, Vladislav; Periasamy, A.; Sheehan, J. J. Application of advanced light microscopic techniques to gain deeper insights into cheese matrix physico-chemistry. Dairy Science & Technology. 2015, vol. 95, iss. 5, pp. 687-700. ISSN 1958-5586. ABSTRACT

Hrubanová, Kamila; Bernatová, Silvie; Samek, Ota; Šerý, Mojmír; Zemánek, Pavel; Nebesářová, Jana; Růžička, F.; Krzyžánek, Vladislav. Monitoring of Multilayered Bacterial Biofilm Morphology by Cryo-SEM for Raman Spectroscopy Measurements. Microscopy and Microanalysis. 2015, vol. 21, S3, pp. 187-188. ISSN 1431-9276.

Krzyžánek, Vladislav; Hrubanová, Kamila; Samek, Ota; Obruča, S.; Márová, I.; Bernatová, Silvie; Šiler, Martin; Zemánek, Pavel. Cryo-SEM and Raman Spectroscopy Study of the Involvement of Polyhydroxyalkanoates in Stress Response of Bacteria. Microscopy and Microanalysis. 2015, vol. 21, S3, pp. 183-184. ISSN 1431-9276.

Samek, Ota; Bernatová, Silvie; Ježek, Jan; Šiler, Martin; Šerý, Mojmír; Krzyžánek, Vladislav; Hrubanová, Kamila; Zemánek, Pavel; Holá, V.; Růžička, F. Identification of individual biofilm-forming bacterial cells using Raman tweezers. Journal of Biomedical Optics. 2015, vol. 20, iss. 5, 051038:1-6. ISSN 1083-3668. ABSTRACT

Samek, Ota; Hároniková, A.; Vaškovicová, Naděžda; Hrubanová, Kamila; Ježek, Jan; Márová, I.; Krzyžánek, Vladislav; Zemánek, Pavel. SEM and Raman Spectroscopy Applied to Biomass Analysis for Application in the Field of Biofuels and Food Industry. Microscopy and Microanalysis. 2015, vol. 21, S3, pp. 1775-1776. ISSN 1431-9276.

Vaškovicová, Naděžda; Krzyžánek, Vladislav; Paták, Aleš. Ice Contamination Issues in the Visualization of the Ultrastructure of the Nuclear Envelope by Freeze-Fracture Technique. Microscopy and Microanalysis. 2015, vol. 21, S3, pp. 229-230. ISSN 1431-9276.

2014

Bok, Jan; Schauer, Petr. Apparatus for temperature-dependent cathodoluminescence characterization of materials. Measurement Science and Technology, 2014, vol. 25, iss. 7, 075601:1-7. ISSN 0957-0233. ABSTRACT

Bok, Jan; Schauer, Petr. Performance of SEM Scintillation Detector Evaluated by Modulation Transfer Function and Detective Quantum Efficiency Function. Scanning, 2014, vol. 36, iss. 4, pp. 384-393. ISSN 0161-0457. ABSTRACT

Burdiková, Z.; Hickey, C.; Auty, M. A. E.; Pala, J.; Švindrych, Z.; Steinmetz, I.; Krzyžánek, Vladislav; Hrubanová, Kamila; Sheehan, J. J. Cheese Matrix Microstructure Studied by Advanced Microscopic Techniques. Microscopy and Microanalysis, 2014, vol. 20, S3, pp. 1336-1337. ISSN 1431-9276. ABSTRACT

Hajduová, J.; Procházka, K.; Raus, Vladimír; Šlouf, Miroslav; Krzyžánek, Vladislav; Garamus, V. M.; Štěpánek, M. Structure of polymeric nanoparticles in surfactant-stabilized aqueous dispersions of high-molar-mass hydrophobic graft copolymers. Colloids and Surfaces. A - Physicochemical and Engineering Aspects 2014, vol. 456, 20 August, pp. 10-17. ISSN 0927-7757. ABSTRACT

Hrubanová, Kamila; Voberková, S.; Hermanová, S.; Krzyžánek, Vladislav. Characterization of Polycaprolactone Films Biodeterioration by Scanning Electron Microscopy. Microscopy and Microanalysis, 2014, vol. 20, S3, pp. 1950-1951. ISSN 1431-9276. ABSTRACT

Krzyžánek, Vladislav; Hrubanová, Kamila; Nebesářová, J.; Růžička, F. Cryo-SEM of Perpendicular Cross Freeze-Fractures Through a High-Pressure-frozen Biofilm. Microscopy and Microanalysis, 2014, vol. 20, S3, pp. 1232-1233. ISSN 1431-9276. ABSTRACT

Novotná, V.; Hrubanová, Kamila; Nebesářová, J.; Krzyžánek, Vladislav. Investigation of Electron Beam Induced Mass Loss of Embedding Media in the Low Voltage STEM. Microscopy and Microanalysis, 2014, vol. 20, S3, pp. 1270-1271. ISSN 1431-9276. ABSTRACT

Samek, Ota; Mlynariková, K.; Bernatová, Silvie; Ježek, Jan; Krzyžánek, Vladislav; Šiler, Martin; Zemánek, Pavel; Růžička, F.; Holá, Miroslava; Mahelová, M. Candida parapsilosis Biofilm Identification by Raman Spectroscopy. International Journal of Molecular Sciences, 2014, vol. 15, iss. 12, pp. 23924-23935. E-ISSN 1422-0067. ABSTRACT

2013

Bernatová, Silvie; Samek, Ota; Pilát, Zdeněk; Šerý, Mojmír; Ježek, Jan; Jákl, Petr; Šiler, Martin; Krzyžánek, Vladislav; Zemánek, Pavel; Holá, V.; Dvořáčková, M.; Růžička, F. Following the Mechanisms of Bacteriostatic versus Bactericidal Action Using Raman Spectroscopy. Molecules. 2013, vol. 18, iss. 11, pp. 13188-13199. ISSN 1420-3049. ABSTRACT

Hrubanová, Kamila; Nebesářová, Jana; Růžička, F.; Dluhoš, J.; Krzyžánek, Vladislav. Characterization of Yeast Biofilm by Cryo-SEM and FIB-SEM. Microscopy and Microanalysis. 2013, vol. 19, S2, pp. 226-227. ISSN 1431-9276. ABSTRACT

Krzyžánek, Vladislav; Tacke, S.; Hrubanová, Kamila; Reichelt, R. Beyond Imaging: Scanning Electron Microscope for the Quantitative Mass Measurement. Microscopy and Microanalysis. 2013, vol. 19, S2, pp. 130-131. ISSN 1431-9276. ABSTRACT

Schauer, Petr; Bok, Jan. Study of spatial resolution of YAG:Ce cathodoluminescent imaging screens. Nuclear Instruments & Methods in Physics Research Section B. 2013, vol. 308, 1 August, pp. 68-73. ISSN 0168-583X. ABSTRACT

2012

Ernst, A.; Jekat, S. B.; Zielonka, S.; Mueller, B.; Neumann, U.; Ruping, B.; Twyman, R. M.; Krzyžánek, Vladislav; Pruefer, D.; Noll, G. A. Sieve element occlusion (SEO) genes encode structural phloem proteins involved in wound sealing of the phloem. Proceedings of the National Academy of Sciences of the United States of America. 2012, vol. 109, iss. 28, E1980-E1989. ISSN 0027-8424. ABSTRACT

Groscurth, S.; Mueller, B.; Schwan, S.; Menzel, M.; Diekstall, F.; Senft, M.; Kendall, A.; Kommor, B.; Neumann, U.; Kalischuk, M.; Kawchuk, L. M.; Krzyžánek, Vladislav; Heilmann, A.; Stubbs, G.; Twyman, R. M.; Pruefer, D.; Noll, G. A. Artificial Forisomes Are Ideal Models of Forisome Assembly and Activity That Allow the Development of Technical Devices. Biomacromolecules. 2012, vol. 13, iss. 10, pp. 3076-3086. ISSN 1525-7797. ABSTRACT

Hillebrand, A.; Post, J. J.; Wurbs, D.; Wahler, D.; Lenders, D.; Krzyžánek, Vladislav; Pruefer, D.; Gronover, CH. S. Down-Regulation of Small Rubber Particle Protein Expression Affects Integrity of Rubber Particles and Rubber Content in Taraxacum brevicorniculatum. PLoS ONE. 2012, vol. 7, iss. 7, e41874:1-9. E-ISSN 1932-6203. ABSTRACT

Krzyžánek, Vladislav. Měření hmotnosti pomocí elektronového mikroskopu. Jemná mechanika a optika. 2012, roč. 57, č. 10, s. 275-277. ISSN 0447-6441.

Pořízka, P.; Procházka, D.; Pilát, Zdeněk; Krajčarová, L.; Kaiser, J.; Malina, R.; Novotný, J.; Zemánek, Pavel; Ježek, Jan; Šerý, Mojmír; Bernatová, Silvie; Krzyžánek, Vladislav; Hrubanová, Kamila; Novotný, K.; Trtílek, M.; Samek, Ota. Application of laser-induced breakdown spectroscopy to the analysis of algal biomass for industrial biotechnology. Spectrochimica Acta Part B: Atomic Spectroscopy. 2012, vol. 74-75, iss. AUG-SEP, pp. 169-176. ISSN 0584-8547. ABSTRACT

2011

Bok, Jan; Schauer, Petr. LabVIEW-based control and data acquisition system for cathodoluminescence experiments. Review of Scientific Instruments. 2011, vol. 82, iss. 11, 113109:1-6. ISSN 0034-6748. ABSTRACT

Schauer, Petr. Optimization of decay kinetics of YAG:Ce single crystal scintillators for S(T)EM electron detectors. Nuclear Instruments & Methods in Physics Research Section B. 2011, vol. 269, iss. 21, pp. 2572-2577. ISSN 0168-583X. ABSTRACT

2010

Schauer, F.; Schauer, Petr; Kuřitka, I.; Hua, B. Conjugated Silicon–Based Polymer Resists for Nanotechnologies: EB and UV Meditated Degradation Processes in Polysilanes. Materials Transactions. 2010, vol. 51, iss. 2, pp. 197-201. ISSN 1345-9678. ABSTRACT

Proceedings Paper - International Conference

2018

Adámková, Kateřina, Hrubanová, Kamila, Samek, Ota, Trudičová, M., Sedláček, P., Krzyžánek, Vladislav. Structure investigation of hydrogels using a cryo-SEM. In: Recent Trends in Charged Particle Optics and Surface Physics Instrumentation. Proceedings of the 16th International Seminar.  Brno: Institute of Scientific Instruments The Czech Academy of Sciences, 2018, s. 26-28. ISBN 978-80-87441-23-7.

Lalinský, Ondřej, Schauer, Petr, Rathaiah, M., Kučera, M. Stable Ce4+ centres - a tool to optimize cathodoluminescence performance in garnet scintillators. In: Recent Trends in Charged Particle Optics and Surface Physics Instrumentation. Proceedings of the 16th International Seminar.  Brno: Institute of Scientific Instruments The Czech Academy of Sciences, 2018, s. 44-45. ISBN 978-80-87441-23-7.

Skoupý, Radim, Krzyžánek, Vladislav. Thickness determination of a cathodoluminescence active nanoparticles by means of Quantitative STEM imaging. In: Recent Trends in Charged Particle Optics and Surface Physics Instrumentation. Proceedings of the 16th International Seminar.  Brno: Institute of Scientific Instruments The Czech Academy of Sciences, 2018, s. 74-76. ISBN 978-80-87441-23-7.

2017
 

Hrubanová, Kamila, Krzyžánek, Vladislav, Samek, Ota, Šiler, Martin, Zemánek, Pavel, Hároniková, A., Marová, I. Monitoring lipid production in yeast using SEM and Raman spectroscopy. In: Gajović, A.; Weber, I.; Kovačević, G.; Čadež, V.; Šegota, S.; Peharec Štefanić, P.; Vidoš, A. ed. 13th Multinational Congress on Microscopy: Book of Abstracts.  Zagreb: Ruder Bošković Institute, Croatian Microscopy Society, 2017, s. 308-309. ISBN 978-953-7941-19-2. [Multinational Congress on Microscopy /13./, Rovinj, 24.09.2017-29.09.2017, HR].

Schauer, Petr, Lalinský, Ondřej, Kučera, M., Lučeničová, Z. Superfast scintillators for SEM electron detectors. In: Gajović, A.; Weber, I.; Kovačević, G.; Čadež, V.; Šegota, S.; Peharec Štefanić, P.; Vidoš, A. ed. 13th Multinational Congress on Microscopy: Book of Abstracts.  Zagreb: Ruder Bošković Institute, Croatian Microscopy Society, 2017, s. 132-133. ISBN 978-953-7941-19-2. [Multinational Congress on Microscopy /13./, Rovinj, 24.09.2017-29.09.2017, HR].

Skoupý, Radim, Fialová, D., Dörnhöferová, M., Krzyžánek, Vladislav, Drozdová, E. Soil contamination of human dental calculus determined by Energy-dispersive X-ray spectroscopy. In: Gajović, A.; Weber, I.; Kovačević, G.; Čadež, V.; Šegota, S.; Peharec Štefanić, P.; Vidoš, A. ed. 13th Multinational Congress on Microscopy: Book of Abstracts.  Zagreb: Ruder Bošković Institute, Croatian Microscopy Society, 2017, s. 508-509. ISBN 978-953-7941-19-2. [Multinational Congress on Microscopy /13./, Rovinj, 24.09.2017-29.09.2017, HR].

Štark, T., Dražanová, Eva, Vaškovicová, Naděžda, Pekařík, V., Rudá-Kučerová, J., Skoupý, Radim, Kulich, P., Buchtová, M., Starčuk jr., Zenon, Drago, F., Šulcová, A., Micale, V. Sex differences in a neurodevelopmental animal model of schizophrenia: focus on white matter structures and myelin. In: European Neuropsychopharmacology.  Vol. 72 S4. Amsterdam: Elsevier, 2017, S890-S891. ISSN 0924-977X. [Congress of the European-College-of-Neuropsychopharmacology (ECNP) /30./, Paris, 02.09.2017-05.09.2017, FR].

Vaškovicová, Naděžda, Skoupý, Radim, Hrubanová, Kamila, Kulich, P., Turánek, J., Krzyžánek, Vladislav. Localization of nanodiamonds inside cancer cells using cathodoluminescence imaging in the cryo-SEM. In: Gajović, A.; Weber, I.; Kovačević, G.; Čadež, V.; Šegota, S.; Peharec Štefanić, P.; Vidoš, A. ed. 13th Multinational Congress on Microscopy: Book of Abstracts.  Zagreb: Ruder Bošković Institute, Croatian Microscopy Society, 2017, s. 80-81. ISBN 978-953-7941-19-2. [Multinational Congress on Microscopy /13./, Rovinj, 24.09.2017-29.09.2017, HR].

2016

Hrubanová, Kamila; Skoupý, Radim; Nebesářová, Jana; Růžička, F.; Krzyžánek, Vladislav. The sample preparation for cryo-SEM: the real ultrastructure of microbial biofilm or just artifacts?. In EMC2016. The 16th European Microscopy Congress. Proceedings. Oxford: Wiley, 2016, S. 203-204. ISBN 9783527808465. [EMC2016. European Microscopy Congress /16./, Lyon, 28.08.2016-02.09.2016, FR].

Krzyžánek, Vladislav; Tacke, S. MASDET2 – software for quantitative STEM imaging. In EMC2016. The 16th European Microscopy Congress. Proceedings. Oxford: Wiley, 2016, S. 583-584. ISBN 9783527808465. [EMC2016. European Microscopy Congress /16./, Lyon, 28.08.2016-02.09.2016, FR].

Lalinský, Ondřej; Schauer, Petr; Kučera, M.; Hanuš, M.; Lučeničová, Z. New detectors for low-energy BSE. In Mika, Filip (ed.). Proceedings of the 15th International Seminar on Recent Trends in Charged Particle Optics and Surface Physics Instrumentation. Brno: Institute of Scientific Instruments CAS, 2016, S. 34-35. ISBN 978-80-87441-17-6. [International Seminar on Recent Trends in Charged Particle Optics and Surface Physics Instrumentation /15./, Skalský dvůr, 29.05.2016-03.06.2016, CZ].

Lalinský, Ondřej; Schauer, Petr; Kučera, M.; Lučeničová, Z.; Hanuš, M. Prospective scintillators for low-energy BSE detectors. In EMC2016. The 16th European Microscopy Congress. Proceedings. Oxford: Wiley, 2016, S. 1160-1161. ISBN 9783527808465. [EMC2016. European Microscopy Congress /16./, Lyon, 28.08.2016-02.09.2016, FR]. Obruča, S.; Doskočil, L.; Krzyžánek, Vladislav; Hrubanová, Kamila; Sedláček, P.; Mravec, F.; Samek, Ota; Kučera, J.; Benešová, P.; Márová, I. Polyhydroxyalkanoates in bacterial cells – more than just storage materials. In Materials Science Forum. Vol. 851. London: Trans Tech Publications, 2016, S. 20-25. ISSN 1662-9752. [Conference on Chemistry and Life /6./, Brno, 02.09.2016-04.09.2016, CZ].

Schauer, Petr; Lalinský, Ondřej; Lučeničová, Z.; Kučera, M. Multicomponent garnet film scintillators for SEM electron detectors. In EMC2016. The 16th European Microscopy Congress. Proceedings. Oxford: Wiley, 2016, S. 374-375. ISBN 9783527808465. [EMC2016. European Microscopy Congress /16./, Lyon, 28.08.2016-02.09.2016, FR].

Skoupý, Radim; Krzyžánek, Vladislav; Nebesářová, Jana. Plasma cleaning effect on the stability of the Epon resin sections. In EMC2016. The 16th European Microscopy Congress. Proceedings. Oxford: Wiley, 2016, S. 597-598. ISBN 9783527808465. [EMC2016. European Microscopy Congress /16./, Lyon, 28.08.2016-02.09.2016, FR].

Šiler, Martin; Samek, Ota; Bernatová, Silvie; Mlynariková, K.; Ježek, Jan; Šerý, Mojmír; Krzyžánek, Vladislav; Hrubanová, Kamila; Holá, M.; Růžička, F.; Zemánek, Pavel. Principal component analysis of Raman spectroscopy data for determination of biofilm forming bacteria and yeasts. In Mika, Filip (ed.). Proceedings of the 15th International Seminar on Recent Trends in Charged Particle Optics and Surface Physics Instrumentation. Brno: Institute of Scientific Instruments CAS, 2016, S. 66-67. ISBN 978-80-87441-17-6. [International Seminar on Recent Trends in Charged Particle Optics and Surface Physics Instrumentation /15./, Skalský dvůr, 29.05.2016-03.06.2016, CZ].

Tacke, S.; Krzyžánek, Vladislav; Nüsse, H.; Rosenthal, A.; Klingauf, J.; Wepf, R.A.; Reichelt, R. A versatile high-vacuum cryo transfer system for cryo microscopy and analytics. In EMC2016. The 16th European Microscopy Congres. Proceedings. Oxford: Wiley, 2016, S. 412-413. ISBN 9783527808465. [EMC2016. European Microscopy Congress /16./, Lyon, 28.08.2016-02.09.2016, FR].

2015

Hrubanová, Kamila; Samek, Ota; Obruča, S.; Hároniková, A.; Krzyžánek, Vladislav. Scanning electron microscopy and Raman spectroscopy of microorganisms related to biofuels and biopolymer production. In MC 2015. Microscopy Conference Proceedings. Göttingen: DGE, 2015, S. 700-701. [Microscopy Conference 2015, Göttingen, 06.09.2015-11.09.2015, DE].

Krzyžánek, Vladislav; Skoupý, Radim; Hrubanová, Kamila; Kočová, L.; Nebesářová, Jana. Influence of ultrathin resin section aging and its reduction for imaging in the low voltage STEM. In MC 2015. Microscopy Conference Proceedings. Göttingen: DGE, 2015, S. 817-818. [Microscopy Conference 2015, Göttingen, 06.09.2015-11.09.2015, DE].

Krzyžánek, Vladislav; Keller, U.; Sporenberg, N.; Schönhoff, M. Structure of polyelectrolyte hollow capsules by scanning electron microscopy. In 12th Multinational Congress on Microscopy. Budapest: Akadémiai Kiadó, 2015, S. 211-212. ISBN 978-963-05-9653-4. [MCM 2015. Multinational Congress on Microscopy /12./, Eger, 23.08.2015-28.08.2015, HU].

Skoupý, Radim; Krzyžánek, Vladislav; Kočová, L.; Nebesářová, Jana. Electron beam induced mass loss dependence on aging of Epon resin sections. In 12th Multinational Congress on Microscopy. Budapest: Akadémiai Kiadó, 2015, S. 112-113. ISBN 978-963-05-9653-4. [MCM 2015. Multinational Congress on Microscopy /12./, Eger, 23.08.2015-28.08.2015, HU].

2014

Bernatová, Silvie; Samek, Ota; Pilát, Zdeněk; Šerý, Mojmír; Ježek, Jan; Jákl, Petr; Šiler, Martin; Krzyžánek, Vladislav; Zemánek, Pavel; Holá, V.; Dvořáčková, M.; Růžička, F. Raman tweezers on bacteria: following the mechanisms of bacteriostatic versus bactericidal action. In Biophotonics: Photonic Solutions for Better Health Care IV (Proceedings of SPIE 9129). Bellingham: SPIE, 2014, 91291Y:1-7. ISBN 9781628410778. ISSN 0277-786X. [Biophotonics: Photonic Solutions for Better Health Care /4./, Brussels, 14.04.2014-17.04.2014, BE].

Hrubanová, Kamila; Nebesářová, Jana; Růžička, F.; Krzyžánek, Vladislav. Comparison of freeze fracture images of mixed bacterial/yeast biofilm in cryo-SEM with high pressure freezing fixation. In 18th International Microscopy Congres. Proceedings. Praha: Czechoslovak Microscopy Society, 2014. ISBN 978-80-260-6720-7. [International Microscopy Congres /18./, Praha, 07.09.2014-12.09.2014, CZ].

Krzyžánek, Vladislav; Novotná, V.; Hrubanová, Kamila; Nebesářová, J. Beam damage of embedding media sections and their investigations by SEM. In 18th International Microscopy Congres. Proceedings. Praha: Czechoslovak Microscopy Society, 2014. ISBN 978-80-260-6720-7. [International Microscopy Congres /18./, Praha, 07.09.2014-12.09.2014, CZ].

Lalinský, Ondřej; Bok, Jan; Schauer, Petr; Frank, Luděk. Performance of YAG:Ce Scintillators for Low-Energy Electron Detectors in S(T)EM. In 18th International Microscopy Congres. Proceedings. Praha: Czechoslovak Microscopy Society, 2014. ISBN 978-80-260-6720-7. [International Microscopy Congres /18./, Praha, 07.09.2014-12.09.2014, CZ].

Müllerová, Ilona; Radlička, Tomáš; Mika, Filip; Krzyžánek, Vladislav; Neděla, Vilém; Sobota, Jaroslav; Zobač, Martin; Kolařík, Vladimír; Starčuk jr., Zenon; Srnka, Aleš; Jurák, Pavel; Zemánek, Pavel; Číp, Ondřej; Lazar, Josef; Mrňa, Libor. Main Activites of the Institute of Scientific Instruments. In Workshop of Interesting Topics of SEM and ESEM. Brno: Institute of Scientific Instruments AS CR, v. v. i, 2014, S. 7-8. ISBN 978-80-87441-12-1. [Workshop of Interesting Topics of SEM and ESEM, Mikulov, 26.08.2014-31.08.2014, CZ].

Samek, Ota; Mlynariková, K.; Bernatová, Silvie; Ježek, Jan; Krzyžánek, Vladislav; Šiler, Martin; Zemánek, Pavel; Růžička, F. Reproducible and time-course study of yeast biofilm by Raman spectroscopy. In 19th Polish-Slovak-Czech Optical Conference on Wave and Quantum Aspects of Contemporary Optics (Proceedings of SPIE 9441). Bellingham: SPIE, 2014, 94411M:1-9. ISBN 9781628415568. ISSN 0277-786X. [Polish-Slovak-Czech Optical Conference on Wave and Quantum Aspects of Contemporary Optics /19./, Jelenia Góra, 08.09.2014-12.09.2014, PL].

Schauer, Petr; Bok, Jan. Innovation possibilities of scintillation electron detector for SEM. In 18th International Microscopy Congres. Proceedings. Praha: Czechoslovak Microscopy Society, 2014. ISBN 978-80-260-6720-7. [International Microscopy Congres /18./, Praha, 07.09.2014-12.09.2014, CZ].

Tacke, S.; Krzyžánek, Vladislav; Reichelt, R.; Klingauf, J. A cryo high-vacuum shuttle for correlative cryogenic investigations. In 18th International Microscopy Congres. Proceedings. Praha: Czechoslovak Microscopy Society, 2014. ISBN 978-80-260-6720-7. [International Microscopy Congres /18./, Praha, 07.09.2014-12.09.2014, CZ].

Vaškovicová, Naděžda; Valigurová, A.; Hodová, I.; Melicherová, J.; Krzyžánek, Vladislav. Freeze-fracture technique and artefacts caused by processing conditions. In 18th International Microscopy Congres. Proceedings. Praha: Czechoslovak Microscopy Society, 2014. ISBN 978-80-260-6720-7. [International Microscopy Congres /18./, Praha, 07.09.2014-12.09.2014, CZ].

2013

Bok, Jan; Schauer, Petr. Mechanism of electron-photon conversion in YAG: Ce scintillator for SEM electron detectors. In Microscopy conference (MC) 2013. Proceedings. Vol. 2. Regensburg: University of Regensburg, 2013, S. 121-122. [Microscopy Conference 2013, Regensburg, 25.08.2013-30. 08.2013, DE].

Bok, Jan; Schauer, Petr. Two-state model for cathodoluminiscence kinetics of YAG:Ce single-crystal scintillators. In Proceedings of the 12th International Conference on Inorganic Scintillators and Their Applications. Shanghai: Shaghai Institute of Ceramic, CAS, 2013, S. 18. [SCINT 2013. International Conference on Inorganic Scintillators and Their Applications /12./, Shanghai, 15.04.2013-19.04.2013, CN].

Hrubanová, Kamila; Nebesářová, J.; Růžička, F.; Dluhoš, J.; Samek, Ota; Krzyžánek, Vladislav. Comparison of biofilm formation of mixed yeast/bacterial cultures by FIB-SEM tomography. In Microscopy conference (MC) 2013. Proceedings. Vol. 2. Regensburg: University of Regensburg, 2013, S. 424-425. [Microscopy Conference 2013, Regensburg, 25.08.2013-30. 08.2013, DE].

Hrubanová, Kamila; Růžička, F.; Nebesářová, J.; Burdíková, Z.; Dluhoš, J.; Collakova, J.; Samek, Ota; Krzyžánek, Vladislav. Electron and light microscopy of yeast biofilm. In Microscopy conference (MC) 2013. Proceedings. Vol. 2. Regensburg: University of Regensburg, 2013, S. 19-20. [Microscopy Conference 2013, Regensburg, 25.08.2013-30. 08.2013, DE].

Krzyžánek, Vladislav; Keller, U.; Sporenberg, N.; Schönhoff, M. Structural characterization of polyelectrolyte multilayer hollow capsules by SEM. In Microscopy conference (MC) 2013. Proceedings. Vol. 2. Regensburg: University of Regensburg, 2013, S. 485-486. [Microscopy Conference 2013, Regensburg, 25.08.2013-30. 08.2013, DE].

Tacke, S.; Krzyžánek, Vladislav; Reichelt, R.; Klingauf, J. A cryo high-vacuum shuttle for (correlative) cryogenic electron microscopy. In Microscopy conference (MC) 2013. Proceedings. Vol. 2. Regensburg: University of Regensburg, 2013, S. 294-295. [Microscopy Conference 2013, Regensburg, 25.08.2013-30. 08.2013, DE].

Tacke, S.; Krzyžánek, Vladislav; Reichelt, R.; Klingauf, J. Correlation of structure and mass via scanning transmission electron microscopy. In Microscopy conference (MC) 2013. Proceedings. Vol. 2. Regensburg: University of Regensburg, 2013, S. 310-311. [Microscopy Conference 2013, Regensburg, 25.08.2013-30. 08.2013, DE].

2012

Bernatová, Silvie; Samek, Ota; Pilát, Zdeněk; Šerý, Mojmír; Ježek, Jan; Krzyžánek, Vladislav; Zemánek, Pavel; Růžička, F. Raman spectroscopy for bacterial identification and characterization. In CPS 2012. 18th Czech-Polish-Slovak Optical Conference on Wave and Quantum Aspects of Contemporary Optics (Proceedings of SPIE Vol.8697). Bellingham: SPIE, 2012, 86970Y: 1-6. ISBN 978-0-8194-9481-8. [CPS 2012. Czech-Polish-Slovak Optical Conference on Wave and Quantum Aspects of Contemporary Optics /18./, Ostravice, 03.09.2012-07.09.2012, CZ].

Bok, Jan; Schauer, Petr. Quality assessment of scintillation detector in SEM using MFT. In Mika, F. (ed.). Proceedings of the 13th International Seminar on Recent Trends in Charged Particle Optics and Surface Physics Instrumentation. Brno: Institute of Scientific Instruments AS CR, v.v.i, 2012, S. 9-10. ISBN 978-80-87441-07-7. [International Seminar on Recent Trends in Charged Particle Optics and Surface Physics Instrumentation /13./, Skalský dvůr, 25.06.2012-29.06.2012, CZ].

Hrubanová, Kamila; Růžička, F.; Nebesářová, J.; Klingauf, J.; Samek, Ota; Krzyžánek, Vladislav. Characterisation of bacterial/yeast biofilms by scanning electron microscopy. In EMC 2012 Proceedings. 15th European Microscopy Congress. vol. 1: Physical sciences applications. Manchester: The Royal Microscopical Society, 2012, S. 671-672. ISBN 978-0-9502463-5-2. [EMC 2012. European Microscopy Congress /15./, Manchester, 16.09.2012-21.09.2012, US].

Krzyžánek, Vladislav; Tacke, S.; Sporenberg, N.; Schönhoff, M.; Reichelt, R. Mass measurements using electron scattering employing an "in-lens" scanning electron microscope. In EMC 2012. Proceedings of the 15th European Microscopy Congress. Physical Sciences: Tools and Techniques vol. 2. Manchester: The Royal Microscopical Society, 2012, S. 111-112. ISBN 978-0-9502463-6-9. [EMC 2012. European Microscopy Congress /15./, Manchester, 16.09.2012-21.09.2012, US].

Schauer, Petr; Bok, Jan. Current state and prospects of scintillation materials for detectors in SEM. In Mika, F. (ed.). Proceedings of the 13th International Seminar on Recent Trends in Charged Particle Optics and Surface Physics Instrumentation. Brno: Institute of Scientific Instruments AS CR, v.v.i, 2012, S. 67-68. ISBN 978-80-87441-07-7. [International Seminar on Recent Trends in Charged Particle Optics and Surface Physics Instrumentation /13./, Skalský dvůr, 25.06.2012-29.06.2012, CZ].

Tacke, S.; Krzyžánek, Vladislav; Klingauf, J. A new cryo high-vacuum transfer system for STEM and TEM. In EMC 2012. Proceedings of the 15th European Microscopy Congress. vol. 3: Life Sciences. Manchester: The Royal Microscopical Society, 2012, S. 445-446. ISBN 978-0-9502463-7-6. [EMC 2012. European Microscopy Congress /15./, Manchester, 16.09.2012-21.09.2012, US].

2011

Bok, Jan; Schauer, Petr. Afterglow of YAG:Ce single crystal scintillators for S(T)EM electron detectors. In Proceedings of the 10th Multinational Congress on Microscopy 2011. Urbino: SISM, 2011, S. 61-62. [Multinational Congress on Microscopy 2011 /10./ - MCM 2011, Urbino, 04.09.2011-09.09.2011, IT].

Contractual Research

2018

Petrov, Michal, Vaškovicová, Naděžda, Krzyžánek, Vladislav. SMV-2018-18: Rastrovací elektronová mikroskopie biouhlů a půdních směsí. Brno: Masarykova univerzita Brno, Přírodovědecká fakulta, 2018. 3 s.

2017

Vaškovicová, Naděžda, Krzyžánek, Vladislav. SMV-2017-25: Rastrovací elektronová mikroskopie biouhlů a půdních směsí. Brno: Masarykova univerzita, Přírodovědecká fakulta, 2017. 3 s.

2015

Krzyžánek, Vladislav; Samek, Ota. SMV-2015-25: Expertíza mikroorganizmů pomocí vysokorozlišující elektronové mikroskopie a Ramanovy spektroskopie. Brno: VUT v Brně, Fakulta chemická, 2015. 3 s.

Collaborative Research

2017

Krzyžánek, Vladislav, Skoupý, Radim, Hrubanová, Kamila, Vaškovicová, Naděžda. Kryo-držák pro SEM umožňující zobrazování tenkých vzorků v transmisním módu s možností prvkové a katodoluminiscenční analýzy. 2017.